IonSource

Shareware / Freeware /Demoware
Mass Spectrometry Programs on the Internet

home | disclaimer


Programs:

Freeware and shareware definitions

 


Site Title:  BSI, PEAKS (Not free but 30 day free trial available)
Author(s): BSI
Platform: 
Windows/Linux
Site Origin:
bioinfor.com
Address for download: http://www.bioinfor.com/peaks/downloads/trial.html
Program:
Program: PEAKS, a complete software for proteomics, offers a de novo assisted database search engine for peptide identification software. PEAKS additionally employs several analytical algorithms to characterize all PTMs and mutations.
*A free PEAKS Viewer is available for sharing results:
http://www.bioinfor.com/peaks/products/overview.html


Site Title: GeneBio SmileMS, Not free but you can request a demo
Author(s): GeneBio
Platform: Web

Site Origin: GeneBio

Address for download: http://www.genebio.com/products/smilems
Program: SmileMS, small molecule identification software for LC-MS systems


Site Title: mMass - Open Source Mass Spectrometry Tool
Author(s): Martin Strohalm, PhD.
Platform:
win/mac/linux
Site Origin:
ms.biomed.cas.cz
Address for download: http://www.mmass.org
Program: mMass presents an open source and multi-platform package of many tools for mass spectrometric data analysis, mainly in proteomics.
(This program has yet to be reviewed by IonSource)


Site Title: NCRR Proteomics Resource at PNNL (Software Tools)
Author(s): NCRR
Platform: PC

Site Origin:
NCRR
Address for download: http://ncrr.pnl.gov/software/
Program: Proteomics Software and Tools


Site Title: DBToolkit
Author(s): Lennart Martens
Platform: PC

Site Origin:
Universiteit Gent
Address for download: https://code.google.com/p/dbtoolkit/
Program: DBToolkit
Reference:
http://bioinformatics.oxfordjo urnals.org/cgi/content/abstrac t/21/17/3584
(article is free for download)

"DBToolkit is a user-friendly, easily extensible tool that allows the processing of protein sequence databases to peptidecentric sequence databases." (this is a quote from the paper)


Site Title: MassKinetics
Author(s): L. Drahos and K. Vékey
Platform: PC

Site Origin:
MassKinetics
Address for download: http://www.chemres.hu/ms/masskinetics
Program: MassKinetics 1.2 Light
Reference: L. Drahos and K. Vékey, J. Mass Spectrom. 36, 237 (2001) 

Theory and Windows-based program to calculate mass spectra. For research and for teaching mass spectrometry and reaction kinetics.


Site Title: MS/MS Software, Software Tools for Mass Spectrometry
Author(s): Mike Senko
Platform: PC

Site Origin:
MS/MS Software
Address for download: see links below
Program:
IsoPro 3.1: (freeware) "An old favorite, imagine having a periodic chart on your PC that can perform mass calculations and isotopic simulations "


Site Title: WSEARCH SOFTWARE
Author(s): Frank Antolasic
Platform: PC

Site Origin:
WSEARCH SOFTWARE  www.wsearch.com.au
Address for download: www.wsearch.com.au
Program:
WSEARCH  "This is a Windows program that can read Multiple Mass spectral file formats."  Supports: Kratos DS90, AEI DS55, HP Chemstation, HP Pascal.(wow I thought I was the last one with a Pascal workstation), Varian Saturn, Finnigan ITS40, Magnum, Shrader LRP files, JCAMP_DX files, netCDF.


Site Title: Sherpa : "Your Guide to the Peaks"
Author(s): J. Alex Taylor
Platform: Macintosh

Site Origin:
Home Page, http://www.hairyfatguy.com/Sherpa/
Address for download: http://www.hairyfatguy.com/Sherpa/download.html
Program: Sherpa
is "A Macintosh-based Expert System for LC/MS & MS/MS Analysis"  Sherpa contains a useful peptide calculator and it is also useful for LC/MS analysis.  "Sherpa Lite"  is available for free it will do theoretical protein digests but will not search a sequence by mass.



Site Title: The GPM  (The Global Proteome Machine Organization)
Author(s):  Ron Beavis
Site Origin:
http://www.thegpm.org/TANDEM/index.html
Address for download: ftp://ftp.thegpm.org/
Programs:  X!Tandem an open source proteomics search engine for mass spectrometry data.  



Site Title: MagTran  (the magic transformer)
Author(s):  Zhongqi Zhang
Site Origin:
Homepage
Address for download: http://www.geocities.com/SiliconValley/Hills/2679/magtran.html
Programs: 
MagTran, Freeware deconvolution software for electrospray spectra. If you do not have the deconvolution software package for your electrospray instrument, it is worth a try.  Poster was presented at ASMS 1999.


Site Title: PC Software (NMR, IR, etc.)
Author(s):  Harold M. Bell
Site Origin:
Virginia Tech Chemistry Department
Address for download: http://www.files.chem.vt.edu/chem-dept/hbell/simulation/hb2/TESTPAGE.htm

Programs:  
"APT simulates the attached proton test in carbon-13 NMR."
"DECAY is a program that simulates radioactive decay."
"DEPT simulates the DEPT pulse sequence for distinguishing between methine, methylene, and methyl carbons in carbon-13 NMR."
"FIDMAKER is a program that creates FIDs"
"FTNMR Simulator is a Microsoft Windows program that simulates the prinicples and operation of Fourier Transform NMR."
"HETJ-2D simulates the two-dimensional heteronuclear J-spectroscopy experiment."
"HOMOJ-2D simulates the two-dimensional homonuclear J-spectroscopy experiment."
"IRREADER is a program that allows off-line processing of FTIR datafiles (Perkin-Elmer, Galactic, Nicolet, JCAMP)."
"NMRSM is a Microsoft Windows version of a program for calculating spin-spin splitting patterns"
"VTFT is a program that performs Fourier transforms on FIDs."  
"XHCORR simulates the two-dimensional carbon-proton correlation experiment."


Disclaimer: We have no control over the content at these external sites and claim no responsibility as to the integrity of the programs that they supply.  It is our suggestion that if you are performing a critical function (as we all are) that you perform your own software validation before proceeding. In addition we grant no licenses to use the software packages supplied at these external sites and it is up to the end user to obtain the grant of use.  See disclaimer link below for further disclaimers of all warrantee. 

-
-

home | disclaimer
Copyright © 2000-2014  IonSource. LLC  All rights reserved. 
Last updated:  Wednesday, April 23, 2014 09:22:03 AM